# HG changeset patch
# User davidvanzessen
# Date 1427706685 14400
# Node ID 8a40634fd4b3fa838ae673ebf1b6a8912e5f7aec
# Parent  6f8392d090bdf87275051c615e656a65a26504d8
Uploaded

diff -r 6f8392d090bd -r 8a40634fd4b3 tool_dependencies.xml
--- a/tool_dependencies.xml	Mon Mar 30 05:08:28 2015 -0400
+++ b/tool_dependencies.xml	Mon Mar 30 05:11:25 2015 -0400
@@ -12,7 +12,7 @@
 								<destination>$INSTALL_DIR</destination>
 							</action>
 							<action type="set_environment">
-								<environment_variable name="BLASTN" action="set_to">$INSTALL_DIR</environment_variable>
+								<environment_variable name="BLASTN_DIR" action="set_to">$INSTALL_DIR</environment_variable>
 							</action>
             </actions>
         </install>
diff -r 6f8392d090bd -r 8a40634fd4b3 wrapper.sh
--- a/wrapper.sh	Mon Mar 30 05:08:28 2015 -0400
+++ b/wrapper.sh	Mon Mar 30 05:11:25 2015 -0400
@@ -13,6 +13,8 @@
 cat $PWD/files/*/8_* > $PWD/mutationstats.txt
 cat $PWD/files/*/10_* > $PWD/hotspots.txt
 
+echo "${BLASTN_DIR}"
+
 
 echo "identification"
 python $dir/gene_identification.py --input $PWD/summary.txt --output $outdir/annotatedsummary.txt