Mercurial > repos > davidvanzessen > mutation_analysis

diff wrapper.sh @ 100:ff5be711382b draft

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Uploaded
author davidvanzessen
date Fri, 17 Jun 2016 05:36:32 -0400
parents 86206431cbb0
children 3cffb8a38bb1
line wrap: on
line diff
--- a/wrapper.sh	Thu Jun 16 10:01:54 2016 -0400
+++ b/wrapper.sh	Fri Jun 17 05:36:32 2016 -0400
@@ -159,7 +159,7 @@
 mkdir $outdir/sequence_overview
 
 #Rscript $dir/sequence_overview.r $outdir/identified_genes.txt $PWD/sequences.txt $outdir/merged.txt $outdir/sequence_overview $classes $outdir/hotspot_analysis_sum.txt 2>&1
-Rscript $dir/sequence_overview.r $outdir/before_unique_filter.txt $outdir/sequence_overview $classes $outdir/hotspot_analysis_sum.txt 2>&1
+Rscript $dir/sequence_overview.r $outdir/before_unique_filter.txt $outdir/merged.txt $outdir/sequence_overview $classes $outdir/hotspot_analysis_sum.txt 2>&1
 
 echo "<table border='1'>" > $outdir/base_overview.html