Mercurial > repos > davidvanzessen > mutation_analysis
diff mutation_analysis.r @ 94:e39176ccddc8 draft
Uploaded
| author | davidvanzessen |
|---|---|
| date | Tue, 07 Jun 2016 08:39:08 -0400 |
| parents | b523ce95d857 |
| children | 5ffbf40cdd4b |
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--- a/mutation_analysis.r Tue Jun 07 04:45:50 2016 -0400 +++ b/mutation_analysis.r Tue Jun 07 08:39:08 2016 -0400 @@ -122,6 +122,7 @@ dat$VRegionMutations = apply(dat, FUN=sum_by_row, 1, columns=VRegionMutations_columns) VRegionNucleotides_columns = paste(regions, ".IMGT.Nb.of.nucleotides", sep="") +dat$FR3.IMGT.Nb.of.nucleotides = nchar(dat$FR3.IMGT.seq) dat$VRegionNucleotides = apply(dat, FUN=sum_by_row, 1, columns=VRegionNucleotides_columns) transitionMutations_columns = paste(rep(regions, each=4), c(".IMGT.a.g", ".IMGT.g.a", ".IMGT.c.t", ".IMGT.t.c"), sep="")