Mercurial > repos > davidvanzessen > mutation_analysis

diff wrapper.sh @ 76:becea91089ed draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author davidvanzessen
date Mon, 09 May 2016 03:45:39 -0400
parents 7acdcd5c52ef
children c5c86d15cb94
line wrap: on
line diff
--- a/wrapper.sh	Wed May 04 08:44:16 2016 -0400
+++ b/wrapper.sh	Mon May 09 03:45:39 2016 -0400
@@ -229,7 +229,11 @@
 	Rscript $dir/naive_output.r $naive_output_ca $outdir/merged.txt $naive_output_ca $naive_output_cg $naive_output_cm 2>&1
 fi
 
+echo "---------------- sequence_overview.r ----------------"
 
+mkdir $outdir/sequence_overview
+
+Rscript $dir/sequence_overview.r $outdir/identified_genes.txt $PWD/sequences.txt $outdir/sequence_overview 2>&1