Mercurial > repos > davidvanzessen > mutation_analysis
diff wrapper.sh @ 92:b869a126e2c4 draft
Uploaded
author | davidvanzessen |
---|---|
date | Mon, 06 Jun 2016 08:26:54 -0400 |
parents | f0e8dac22c6e |
children | e39176ccddc8 |
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--- a/wrapper.sh Fri Jun 03 10:35:52 2016 -0400 +++ b/wrapper.sh Mon Jun 06 08:26:54 2016 -0400 @@ -55,7 +55,6 @@ echo "${BLASTN_DIR}" -echo "identification ($method)" echo "---------------- identification ($method) ----------------" echo "---------------- identification ($method) ----------------<br />" >> $output @@ -109,7 +108,7 @@ echo "<table border='1'>" > $outdir/base_overview.html -while read ID class seq A C G T +while IFS=$'\t' read ID class seq A C G T do echo "<tr><td>$ID</td><td>$seq</td><td>$class</td><td>$A</td><td>$C</td><td>$G</td><td>$T</td></tr>" >> $outdir/base_overview.html done < $outdir/sequence_overview/ntoverview.txt