diff wrapper.sh @ 92:b869a126e2c4 draft

Uploaded
author davidvanzessen
date Mon, 06 Jun 2016 08:26:54 -0400
parents f0e8dac22c6e
children e39176ccddc8
line wrap: on
line diff
--- a/wrapper.sh	Fri Jun 03 10:35:52 2016 -0400
+++ b/wrapper.sh	Mon Jun 06 08:26:54 2016 -0400
@@ -55,7 +55,6 @@
 
 echo "${BLASTN_DIR}"
 
-echo "identification ($method)"
 echo "---------------- identification ($method) ----------------"
 echo "---------------- identification ($method) ----------------<br />" >> $output
 
@@ -109,7 +108,7 @@
 
 echo "<table border='1'>" > $outdir/base_overview.html
 
-while read ID class seq A C G T
+while IFS=$'\t' read ID class seq A C G T
 do
 	echo "<tr><td>$ID</td><td>$seq</td><td>$class</td><td>$A</td><td>$C</td><td>$G</td><td>$T</td></tr>" >> $outdir/base_overview.html
 done < $outdir/sequence_overview/ntoverview.txt