Mercurial > repos > davidvanzessen > mutation_analysis

diff mutation_analysis.xml @ 110:ade5cf6fd2dc draft

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Uploaded
author davidvanzessen
date Tue, 02 Aug 2016 08:30:23 -0400
parents e39176ccddc8
children e7b550d52eb7
line wrap: on
line diff
--- a/mutation_analysis.xml	Thu Jul 14 07:29:56 2016 -0400
+++ b/mutation_analysis.xml	Tue Aug 02 08:30:23 2016 -0400
@@ -5,7 +5,7 @@
 	</command>
 	<inputs>
 		<param name="in_file" type="data" label="IMGT zip file to be analysed" />
-		<param name="method" type="select" label="Identification method" help="" >
+		<param name="method" type="select" label="Method of identification of C region" help="" >
 			<option value="custom" selected="true">custom</option>
 			<option value="blastn">blastn</option>
 		</param>
@@ -27,10 +27,10 @@
 			<option value="no" selected="true">No</option>
 		</param>
 		<param name="unique" type="select" label="Remove duplicates based on" help="" >
-			<option value="AA.JUNCTION_V_subclass" selected="true">AA.JUNCTION + V + subclass</option>
-			<option value="AA.JUNCTION_subclass">AA.JUNCTION + subclass</option>
-			<option value="AA.JUNCTION_V">AA.JUNCTION + V</option>
-			<option value="AA.JUNCTION">AA.JUNCTION</option>
+			<option value="AA.JUNCTION_V_subclass" selected="true">Top.V.Gene, CDR3.Seq, C region</option>
+			<option value="AA.JUNCTION_subclass">CDR3.Seq + C region</option>
+			<option value="AA.JUNCTION_V">CDR3.seq + Top.V.Gene</option>
+			<option value="AA.JUNCTION">CDR3.seq</option>
 			<option value="none">Don't remove duplicates</option>
 		</param>
 		<param name="class_filter" type="select" label="Class/Subclass filter" help="" >