Mercurial > repos > davidvanzessen > mutation_analysis

diff tmp/igat.r @ 97:6e8dfbe164c6 draft

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Uploaded
author davidvanzessen
date Wed, 15 Jun 2016 04:48:41 -0400
parents a66eb1c5374c
children 86206431cbb0
line wrap: on
line diff
--- a/tmp/igat.r	Wed Jun 08 03:58:40 2016 -0400
+++ b/tmp/igat.r	Wed Jun 15 04:48:41 2016 -0400
@@ -5,6 +5,8 @@
 
 merged = read.table(merged.file, header=T, sep="\t", fill=T, stringsAsFactors=F)
 
+merged = merged[!grepl("unmatched", merged$best_match),]
+
 for(f in list.files(imgt.dir, pattern="*.txt$")){
 	print(paste("filtering", f))
 	path = paste(imgt.dir, f, sep="")