Mercurial > repos > davidvanzessen > mutation_analysis

diff wrapper.sh @ 108:6add3e66f4fa draft

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author davidvanzessen
date Wed, 13 Jul 2016 09:04:15 -0400
parents 01c9993865af
children ade5cf6fd2dc
line wrap: on
line diff
--- a/wrapper.sh	Wed Jul 13 08:04:13 2016 -0400
+++ b/wrapper.sh	Wed Jul 13 09:04:15 2016 -0400
@@ -148,9 +148,9 @@
 echo "---------------- aa_histogram.r ----------------"
 echo "---------------- aa_histogram.r ----------------<br />" >> $log
 
-cp $outdir/aa_mutations.txt $outdir/aa_mutations_count.txt
 Rscript $dir/aa_histogram.r $outdir/aa_id_mutations.txt $outdir/absent_aa_id.txt "ca,cg,cm" $outdir/ 2>&1
 mv $outdir/aa_histogram_.png $outdir/aa_histogram.png
+mv $outdir/aa_histogram_.txt $outdir/aa_histogram.txt
 
 genes=(ca ca1 ca2 cg cg1 cg2 cg3 cg4 cm)