--- a/mutation_analysis.xml	Thu Aug 11 08:00:00 2016 -0400
+++ b/mutation_analysis.xml	Thu Aug 11 10:35:52 2016 -0400
@@ -20,10 +20,8 @@
 			<option value="dont_filter">Don't filter</option>
 		</param>
 		<param name="filter_uniques" type="select" label="Filter unique sequences" help="See below for an example.">
-			<option value="yes">Remove uniques (CDR1 + FR2 + CDR2 + FR3 + CDR3)</option>
-			<option value="yes_c">Remove uniques (CDR1 + FR2 + CDR2 + FR3 + CDR3 + C)</option>
-			<option value="keep">Keep uniques (CDR1 + FR2 + CDR2 + FR3 + CDR3)</option>
-			<option value="keep_c">Keep uniques (CDR1 + FR2 + CDR2 + FR3 + CDR3 + C)</option>
+			<option value="remove">Remove uniques (Based on nucleotide sequence + C)</option>
+			<option value="keep">Keep uniques (Based on nucleotide sequence + C)</option>
 			<option value="no" selected="true">No</option>
 		</param>
 		<param name="unique" type="select" label="Remove duplicates based on" help="" >
@@ -40,9 +38,9 @@
 			<option value="60_0">>60% class</option>
 		</param>
 		<param name="empty_region_filter" type="select" label="Sequence starts at" help="" >
-			<option value="FR1" selected="true">FR1 : exclude empty CDR1,FR2,CDR2,FR3</option>
+			<option value="FR1" selected="true">FR1: exclude empty CDR1,FR2,CDR2,FR3</option>
 			<option value="CDR1">CDR1: exclude empty FR2,CDR2,FR3</option>
-			<option value="FR2">FR2: exclude empty,CDR2,FR3</option>
+			<option value="FR2">FR2: exclude empty CDR2,FR3</option>
 		</param>
 		<conditional name="naive_output_cond">
 			<param name="naive_output" type="select" label="Output new IMGT archives per class into your history?">