Mercurial > repos > davidvanzessen > mutation_analysis

diff mutation_analysis.r @ 120:613278c1bde0 draft

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Uploaded
author davidvanzessen
date Tue, 16 Aug 2016 09:10:50 -0400
parents 626a956f3811
children 0453ea4d9f14
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--- a/mutation_analysis.r	Thu Aug 11 10:35:52 2016 -0400
+++ b/mutation_analysis.r	Tue Aug 16 09:10:50 2016 -0400
@@ -280,8 +280,6 @@
 
 			print("Plotting stacked transition")
 
-			print(transition2)
-
 			png(filename=paste("transitions_stacked_", name, ".png", sep=""))
 			p = ggplot(transition2, aes(factor(reorder(id, order.x)), y=value, fill=factor(reorder(variable, order.y)))) + geom_bar(position="fill", stat="identity") #stacked bar
 			p = p + xlab("From base") + ylab("To base") + ggtitle("Mutations frequency from base to base") + guides(fill=guide_legend(title=NULL))