Mercurial > repos > davidvanzessen > mutation_analysis

diff mutation_analysis.r @ 98:5ffbf40cdd4b draft

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Uploaded
author davidvanzessen
date Thu, 16 Jun 2016 05:05:47 -0400
parents e39176ccddc8
children ade5cf6fd2dc
line wrap: on
line diff
--- a/mutation_analysis.r	Wed Jun 15 04:48:41 2016 -0400
+++ b/mutation_analysis.r	Thu Jun 16 05:05:47 2016 -0400
@@ -295,7 +295,7 @@
 	  matrx = calculate_result(i, genes[i], dat, matrx, func, fname, genes[i])
 	}
 
-	matrx = calculate_result(i + 1, ".*", dat, matrx, func, fname, name="all")
+	matrx = calculate_result(i + 1, ".*", dat[!grepl("unmatched", dat$best_match),], matrx, func, fname, name="all")
 	
 	result = data.frame(matrx)
 	if(fname == "sum"){