Mercurial > repos > davidvanzessen > mutation_analysis
diff sequence_overview.r @ 89:480fdd383fdb draft
Uploaded
author | davidvanzessen |
---|---|
date | Tue, 31 May 2016 08:30:50 -0400 |
parents | d57c624a9aa9 |
children | f0e8dac22c6e |
line wrap: on
line diff
--- a/sequence_overview.r Mon May 30 10:11:20 2016 -0400 +++ b/sequence_overview.r Tue May 31 08:30:50 2016 -0400 @@ -143,7 +143,7 @@ NTresult = data.frame(nt=c("A", "C", "T", "G")) for(clazz in gene.classes){ - NToverview.sub = NToverview[grepl(clazz, NToverview$best_match),] + NToverview.sub = NToverview[grepl(clazz, paste("^", NToverview$best_match, sep="")),] new.col.x = c(sum(NToverview.sub$A), sum(NToverview.sub$C), sum(NToverview.sub$T), sum(NToverview.sub$G)) new.col.y = sum(new.col.x) new.col.z = round(new.col.x / new.col.y * 100, 2)