Mercurial > repos > davidvanzessen > mutation_analysis
diff wrapper.sh @ 64:0fdd90f7c654 draft
Uploaded
| author | davidvanzessen |
|---|---|
| date | Fri, 01 Apr 2016 08:54:24 -0400 |
| parents | a7381fd96dad |
| children | 88e0e7665086 |
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--- a/wrapper.sh Fri Mar 25 07:50:12 2016 -0400 +++ b/wrapper.sh Fri Apr 01 08:54:24 2016 -0400 @@ -30,13 +30,23 @@ tar -xJf $input -C $PWD/files/$title fi -cat $PWD/files/*/1_* > $PWD/summary.txt -cat $PWD/files/*/3_* > $PWD/sequences.txt -cat $PWD/files/*/5_* > $PWD/aa.txt -cat $PWD/files/*/6_* > $PWD/junction.txt -cat $PWD/files/*/7_* > $PWD/mutationanalysis.txt -cat $PWD/files/*/8_* > $PWD/mutationstats.txt -cat $PWD/files/*/10_* > $PWD/hotspots.txt +cat `find $PWD/files/ -name "1_*"` > $PWD/summary.txt +cat `find $PWD/files/ -name "3_*"` > $PWD/sequences.txt +cat `find $PWD/files/ -name "5_*"` > $PWD/aa.txt +cat `find $PWD/files/ -name "6_*"` > $PWD/junction.txt +cat `find $PWD/files/ -name "7_*"` > $PWD/mutationanalysis.txt +cat `find $PWD/files/ -name "8_*"` > $PWD/mutationstats.txt +cat `find $PWD/files/ -name "10_*"` > $PWD/hotspots.txt + + + +#cat $PWD/files/*/1_* > $PWD/summary.txt +#cat $PWD/files/*/3_* > $PWD/sequences.txt +#cat $PWD/files/*/5_* > $PWD/aa.txt +#cat $PWD/files/*/6_* > $PWD/junction.txt +#cat $PWD/files/*/7_* > $PWD/mutationanalysis.txt +#cat $PWD/files/*/8_* > $PWD/mutationstats.txt +#cat $PWD/files/*/10_* > $PWD/hotspots.txt #BLASTN_DIR="/home/galaxy/tmp/blast/ncbi-blast-2.2.30+/bin"