diff wrapper.sh @ 123:0453ea4d9f14 draft

Uploaded
author davidvanzessen
date Mon, 22 Aug 2016 07:00:23 -0400
parents 3d64b3efd352
children 4a93146f87aa
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--- a/wrapper.sh	Wed Aug 17 08:29:07 2016 -0400
+++ b/wrapper.sh	Mon Aug 22 07:00:23 2016 -0400
@@ -236,7 +236,7 @@
 	echo "---------------- $func table ----------------<br />" >> $log
 	
 	cat $outdir/mutations_${func}.txt $outdir/hotspot_analysis_${func}.txt > $outdir/data_${func}.txt
-
+	
 	echo "<table class='pure-table pure-table-striped'>" >> $output
 	echo "<thead><tr><th>info</th>" >> $output
 	for gene in ${genes[@]}
@@ -360,6 +360,7 @@
 echo "<table class='pure-table pure-table-striped'>" >> $output
 echo "<thead><tr><th>info</th><th>link</th></tr></thead>" >> $output
 echo "<tr><td>The complete dataset</td><td><a href='merged.txt'>Download</a></td></tr>" >> $output
+echo "<tr><td>The SHM Overview table as a dataset</td><td><a href='data_sum.txt'>Download</a></td></tr>" >> $output
 echo "<tr><td>The alignment info on the unmatched sequences</td><td><a href='unmatched.txt'>Download</a></td></tr>" >> $output
 echo "<tr><td>Motif data per sequence ID</td><td><a href='motif_per_seq.txt'>Download</a></td></tr>" >> $output
 echo "<tr><td>Mutation data per sequence ID</td><td><a href='mutation_by_id.txt'>Download</a></td></tr>" >> $output