Mercurial > repos > davidvanzessen > mutation_analysis

diff tmp/baseline/wrapper.sh @ 109:0096cd454380 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author davidvanzessen
date Thu, 14 Jul 2016 07:29:56 -0400
parents a66eb1c5374c
children
line wrap: on
line diff
--- a/tmp/baseline/wrapper.sh	Wed Jul 13 09:04:15 2016 -0400
+++ b/tmp/baseline/wrapper.sh	Thu Jul 14 07:29:56 2016 -0400
@@ -77,6 +77,12 @@
 	fi
 	count=$((count+1))
 done
+
+if [[ $(wc -l < $fasta) -eq "1" ]]; then
+	echo "No sequences in the fasta file, exiting"
+	exit 0
+fi
+
 workdir="$PWD"
 cd $dir
 echo "file: ${inputs[0]}"