Mercurial > repos > davidvanzessen > mutation_analysis

comparison wrapper.sh @ 40:e022c21f8c47 draft

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Uploaded
author davidvanzessen
date Mon, 02 Nov 2015 07:10:36 -0500
parents 7377bf7e632d
children 1b45c7d7d941
comparison
equal deleted inserted replaced
39:7377bf7e632d 40:e022c21f8c47
86 else 86 else
87 echo "<tr><td>$name</td><td>${cax}/${cay} (${caz}%)</td><td>${ca1x}/${ca1y} (${ca1z}%)</td><td>${ca2x}/${ca2y} (${ca2z}%)</td><td>${cgx}/${cgy} (${cgz}%)</td><td>${cg1x}/${cg1y} (${cg1z}%)</td><td>${cg2x}/${cg2y} (${cg2z}%)</td><td>${cg3x}/${cg3y} (${cg3z}%)</td><td>${cg4x}/${cg4y} (${cg4z}%)</td><td>${cmx}/${cmy} (${cmz}%)</td><td>${allx}/${ally} (${allz}%)</td></tr>" >> $output 87 echo "<tr><td>$name</td><td>${cax}/${cay} (${caz}%)</td><td>${ca1x}/${ca1y} (${ca1z}%)</td><td>${ca2x}/${ca2y} (${ca2z}%)</td><td>${cgx}/${cgy} (${cgz}%)</td><td>${cg1x}/${cg1y} (${cg1z}%)</td><td>${cg2x}/${cg2y} (${cg2z}%)</td><td>${cg3x}/${cg3y} (${cg3z}%)</td><td>${cg4x}/${cg4y} (${cg4z}%)</td><td>${cmx}/${cmy} (${cmz}%)</td><td>${allx}/${ally} (${allz}%)</td></tr>" >> $output
88 fi 88 fi
89 done < $outdir/result.txt 89 done < $outdir/result.txt
90 echo "</table>" >> $output 90 echo "</table>" >> $output
91 echo "<a href='unmatched.txt'>unmatched</a><br /><a href='motif_per_seq.txt'>motif per sequence</a><br /><a href='merged.txt'>all data</a><br />" >> $output 91 echo "<a href='unmatched.txt'>unmatched</a><br /><a href='motif_per_seq.txt'>motif per sequence</a><br /><a href='merged.txt'>all data</a><br /><a href='mutation_by_id.txt'>mutations by id</a><br />" >> $output
92 92
93 93
94 echo "<img src='all.png'/><br />" >> $output 94 echo "<img src='all.png'/><br />" >> $output
95 echo "<a href='all.txt'>download data</a><br />" >> $output 95 echo "<a href='all.txt'>download data</a><br />" >> $output
96 if [ -a $outdir/ca.png ] 96 if [ -a $outdir/ca.png ]