Mercurial > repos > davidvanzessen > mutation_analysis

comparison wrapper.sh @ 54:d8daf8ed39e1 draft

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Uploaded
author davidvanzessen
date Mon, 29 Feb 2016 10:55:11 -0500
parents 7290a88ea202
children 0d5add1a9800
comparison
equal deleted inserted replaced
53:7290a88ea202 54:d8daf8ed39e1
30 cat $PWD/files/*/5_* > $PWD/aa.txt 30 cat $PWD/files/*/5_* > $PWD/aa.txt
31 cat $PWD/files/*/6_* > $PWD/junction.txt 31 cat $PWD/files/*/6_* > $PWD/junction.txt
32 cat $PWD/files/*/7_* > $PWD/mutationanalysis.txt 32 cat $PWD/files/*/7_* > $PWD/mutationanalysis.txt
33 cat $PWD/files/*/8_* > $PWD/mutationstats.txt 33 cat $PWD/files/*/8_* > $PWD/mutationstats.txt
34 cat $PWD/files/*/10_* > $PWD/hotspots.txt 34 cat $PWD/files/*/10_* > $PWD/hotspots.txt
35
36 cp $dir/tabber.js $outdir
37 35
38 #BLASTN_DIR="/home/galaxy/tmp/blast/ncbi-blast-2.2.30+/bin" 36 #BLASTN_DIR="/home/galaxy/tmp/blast/ncbi-blast-2.2.30+/bin"
39 37
40 echo "${BLASTN_DIR}" 38 echo "${BLASTN_DIR}"
41 39