Mercurial > repos > davidvanzessen > mutation_analysis

comparison mutation_analysis.xml @ 22:d84c9791d8c4 draft

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author davidvanzessen
date Tue, 07 Apr 2015 03:52:34 -0400
parents c518cf0d4adb
children d436daae9d68
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21:c9f9623f1f76 22:d84c9791d8c4
1 <tool id="mutation_analysis_shm" name="Mutation Analysis" version="1.0"> 1 <tool id="mutation_analysis_shm" name="Mutation Analysis" version="1.0">
2 <description></description> 2 <description></description>
3 <command interpreter="bash"> 3 <command interpreter="bash">
4 wrapper.sh $in_file $method $out_file $out_file.files_path ${in_file.name} 4 wrapper.sh $in_file $method $out_file $out_file.files_path ${in_file.name} ${include_fr1}
5 </command> 5 </command>
6 <inputs> 6 <inputs>
7 <param name="in_file" type="data" label="IMGT zip file to be analysed" /> 7 <param name="in_file" type="data" label="IMGT zip file to be analysed" />
8 <param name="method" type="select" label="Identification method" help="" > 8 <param name="method" type="select" label="Identification method" help="" >
9 <option value="custom" selected="true">custom</option> 9 <option value="custom" selected="true">custom</option>
10 <option value="blastn">blastn</option> 10 <option value="blastn">blastn</option>
11 </param>
12 <param name="include_fr1" type="select" label="Include mutations in FR1 region" help="" >
13 <option value="yes">yes</option>
14 <option value="no" selected="true">no</option>
11 </param> 15 </param>
12 </inputs> 16 </inputs>
13 <outputs> 17 <outputs>
14 <data format="html" name="out_file" label = "Mutation analysis on ${in_file.name}"/> 18 <data format="html" name="out_file" label = "Mutation analysis on ${in_file.name}"/>
15 </outputs> 19 </outputs>