Mercurial > repos > davidvanzessen > mutation_analysis

comparison gene_identification.py @ 21:c9f9623f1f76 draft

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Uploaded
author davidvanzessen
date Thu, 02 Apr 2015 03:31:23 -0400
parents c518cf0d4adb
children 1558fbbc19ef
comparison
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20:850857bc8605 21:c9f9623f1f76
168 linesplt = line.split("\t") 168 linesplt = line.split("\t")
169 if linesplt[2] == "No results": 169 if linesplt[2] == "No results":
170 pass 170 pass
171 ID = linesplt[1] 171 ID = linesplt[1]
172 currentIDHits = hits[ID] 172 currentIDHits = hits[ID]
173 print currentIDHits
174 possibleca = float(len(compiledregex["ca"])) 173 possibleca = float(len(compiledregex["ca"]))
175 possiblecg = float(len(compiledregex["cg"])) 174 possiblecg = float(len(compiledregex["cg"]))
176 possiblecm = float(len(compiledregex["cm"])) 175 possiblecm = float(len(compiledregex["cm"]))
177 cahits = currentIDHits["ca_hits"] 176 cahits = currentIDHits["ca_hits"]
178 cghits = currentIDHits["cg_hits"] 177 cghits = currentIDHits["cg_hits"]