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comparison wrapper.sh @ 58:8bb4d6009e08 draft

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author davidvanzessen
date Tue, 01 Mar 2016 06:53:40 -0500
parents 0d5add1a9800
children 4262e880472d
comparison
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57:cb66d6dd1e66 58:8bb4d6009e08
100 echo "---------------- $func table ----------------" 100 echo "---------------- $func table ----------------"
101 101
102 cat $outdir/mutations_${func}.txt $outdir/hotspot_analysis_${func}.txt > $outdir/result.txt 102 cat $outdir/mutations_${func}.txt $outdir/hotspot_analysis_${func}.txt > $outdir/result.txt
103 103
104 echo "<table border='1' width='100%'><caption><h3>${func} table</h3></caption>" >> $output 104 echo "<table border='1' width='100%'><caption><h3>${func} table</h3></caption>" >> $output
105 echo "<tr><th'>info</th>" >> $output 105 echo "<tr><th>info</th>" >> $output
106 for gene in ${genes[@]} 106 for gene in ${genes[@]}
107 do 107 do
108 tmp=`cat $outdir/${gene}_${func}_n.txt` 108 tmp=`cat $outdir/${gene}_${func}_n.txt`
109 echo "<th><a href='matched_${gene}_${func}.txt'>${gene} (N = $tmp)</a></th>" >> $output 109 echo "<th><a href='matched_${gene}_${func}.txt'>${gene} (N = $tmp)</a></th>" >> $output
110 done 110 done