Mercurial > repos > davidvanzessen > mutation_analysis

comparison wrapper.sh @ 20:850857bc8605 draft

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Uploaded
author davidvanzessen
date Wed, 01 Apr 2015 05:26:52 -0400
parents c518cf0d4adb
children c9f9623f1f76
comparison
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19:c518cf0d4adb 20:850857bc8605
12 cat $PWD/files/*/1_* > $PWD/summary.txt 12 cat $PWD/files/*/1_* > $PWD/summary.txt
13 cat $PWD/files/*/7_* > $PWD/mutationanalysis.txt 13 cat $PWD/files/*/7_* > $PWD/mutationanalysis.txt
14 cat $PWD/files/*/8_* > $PWD/mutationstats.txt 14 cat $PWD/files/*/8_* > $PWD/mutationstats.txt
15 cat $PWD/files/*/10_* > $PWD/hotspots.txt 15 cat $PWD/files/*/10_* > $PWD/hotspots.txt
16 16
17 BLASTN_DIR="/home/galaxy/tmp/blast/ncbi-blast-2.2.30+/bin" 17 #BLASTN_DIR="/home/galaxy/tmp/blast/ncbi-blast-2.2.30+/bin"
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19 echo "${BLASTN_DIR}" 19 echo "${BLASTN_DIR}"
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