Mercurial > repos > davidvanzessen > mutation_analysis

comparison wrapper.sh @ 43:7304b91757a8 draft

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Uploaded
author davidvanzessen
date Tue, 03 Nov 2015 09:40:00 -0500
parents 1b45c7d7d941
children 099cc1254f74
comparison
equal deleted inserted replaced
42:9afd8430de2c 43:7304b91757a8
87 else 87 else
88 echo "<tr><td>$name</td><td>${cax}/${cay} (${caz}%)</td><td>${ca1x}/${ca1y} (${ca1z}%)</td><td>${ca2x}/${ca2y} (${ca2z}%)</td><td>${cgx}/${cgy} (${cgz}%)</td><td>${cg1x}/${cg1y} (${cg1z}%)</td><td>${cg2x}/${cg2y} (${cg2z}%)</td><td>${cg3x}/${cg3y} (${cg3z}%)</td><td>${cg4x}/${cg4y} (${cg4z}%)</td><td>${cmx}/${cmy} (${cmz}%)</td><td>${allx}/${ally} (${allz}%)</td></tr>" >> $output 88 echo "<tr><td>$name</td><td>${cax}/${cay} (${caz}%)</td><td>${ca1x}/${ca1y} (${ca1z}%)</td><td>${ca2x}/${ca2y} (${ca2z}%)</td><td>${cgx}/${cgy} (${cgz}%)</td><td>${cg1x}/${cg1y} (${cg1z}%)</td><td>${cg2x}/${cg2y} (${cg2z}%)</td><td>${cg3x}/${cg3y} (${cg3z}%)</td><td>${cg4x}/${cg4y} (${cg4z}%)</td><td>${cmx}/${cmy} (${cmz}%)</td><td>${allx}/${ally} (${allz}%)</td></tr>" >> $output
89 fi 89 fi
90 done < $outdir/result.txt 90 done < $outdir/result.txt
91 echo "</table>" >> $output 91 echo "</table>" >> $output
92 echo "<a href='unmatched.txt'>unmatched</a><br /><a href='motif_per_seq.txt'>motif per sequence</a><br /><a href='merged.txt'>all data</a><br /><a href='mutation_by_id.txt'>mutations by id</a><br />" >> $output 92 echo "<a href='unmatched.txt'>unmatched</a><br /><a href='motif_per_seq.txt'>motif per sequence</a><br /><a href='merged.txt'>all data</a><br /><a href='mutation_by_id.txt'>mutations by id</a><br /><a href='aa_id_mutations.txt'>AA mutations location by id</a><br />" >> $output
93 93
94 94
95 echo "<img src='all.png'/><br />" >> $output 95 echo "<img src='all.png'/><br />" >> $output
96 echo "<a href='all.txt'>download data</a><br />" >> $output 96 echo "<a href='all.txt'>download data</a><br />" >> $output
97 if [ -a $outdir/ca.png ] 97 if [ -a $outdir/ca.png ]