Mercurial > repos > davidvanzessen > mutation_analysis

comparison aa_histogram.r @ 29:57d197f149c3 draft

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Uploaded
author davidvanzessen
date Thu, 09 Apr 2015 04:56:43 -0400
parents 2433a1e110e1
children 5c6b9e99d576
comparison
equal deleted inserted replaced
28:362ef99f9405 29:57d197f149c3
12 dat_freq = dat / dat_sum * 100 12 dat_freq = dat / dat_sum * 100
13 dat_dt = data.frame(i=1:length(dat_freq), freq=dat_freq) 13 dat_dt = data.frame(i=1:length(dat_freq), freq=dat_freq)
14 14
15 m = ggplot(dat_dt, aes(x=i, y=freq)) + theme(axis.text.x = element_text(angle = 90, hjust = 1)) 15 m = ggplot(dat_dt, aes(x=i, y=freq)) + theme(axis.text.x = element_text(angle = 90, hjust = 1))
16 m = m + geom_histogram(stat="identity", colour = "black", fill = "darkgrey", alpha=0.8) + scale_x_continuous(breaks=1:length(dat_freq), labels=1:length(dat_freq)) 16 m = m + geom_histogram(stat="identity", colour = "black", fill = "darkgrey", alpha=0.8) + scale_x_continuous(breaks=1:length(dat_freq), labels=1:length(dat_freq))
17 m = m + annotate("segment", x = 0.5, y = -0.3, xend=26.5, yend=-0.3, colour="darkgreen", size=1) + annotate("text", x = 13, y = -0.2, label="FR1")
18 m = m + annotate("segment", x = 26.5, y = -0.4, xend=38.5, yend=-0.4, colour="darkblue", size=1) + annotate("text", x = 32.5, y = -0.3, label="CDR1")
19 m = m + annotate("segment", x = 38.5, y = -0.3, xend=55.5, yend=-0.3, colour="darkgreen", size=1) + annotate("text", x = 47, y = -0.2, label="FR2")
20 m = m + annotate("segment", x = 55.5, y = -0.4, xend=65.5, yend=-0.4, colour="darkblue", size=1) + annotate("text", x = 60.5, y = -0.3, label="CDR2")
21 m = m + annotate("segment", x = 65.5, y = -0.3, xend=104.5, yend=-0.3, colour="darkgreen", size=1) + annotate("text", x = 85, y = -0.2, label="FR3")
17 write.table(dat_dt, paste(dirname(outfile), "/aa_histogram.txt", sep=""), sep="\t",quote=F,row.names=F,col.names=T) 22 write.table(dat_dt, paste(dirname(outfile), "/aa_histogram.txt", sep=""), sep="\t",quote=F,row.names=F,col.names=T)
18 23
19 png(filename=outfile, width=1280, height=720) 24 png(filename=outfile, width=1280, height=720)
20 print(m) 25 print(m)
21 dev.off() 26 dev.off()