Mercurial > repos > davidvanzessen > mutation_analysis

comparison gene_identification.py @ 93:53fb2948726e draft

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author davidvanzessen
date Tue, 07 Jun 2016 04:45:50 -0400
parents b869a126e2c4
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92:b869a126e2c4 93:53fb2948726e
158 chunksInCA = len(compiledregex["ca"]) 158 chunksInCA = len(compiledregex["ca"])
159 chunksInCG = len(compiledregex["cg"]) 159 chunksInCG = len(compiledregex["cg"])
160 chunksInCM = len(compiledregex["cm"]) 160 chunksInCM = len(compiledregex["cm"])
161 requiredChunkPercentage = 0.7 161 requiredChunkPercentage = 0.7
162 varsInCA = float(len(ca1.keys()) * 2) 162 varsInCA = float(len(ca1.keys()) * 2)
163 varsInCG = float(len(cg1.keys()) * 2) - 2 # -1 because the sliding window doesn't hit the first nt twice 163 varsInCG = float(len(cg1.keys()) * 2) - 2 # -2 because the sliding window doesn't hit the first and last nt twice
164 varsInCM = 0 164 varsInCM = 0
165 165
166 166
167 167
168 first = True 168 first = True