Mercurial > repos > davidvanzessen > mutation_analysis
comparison gene_identification.py @ 2:2f4298673519 draft
Uploaded
| author | davidvanzessen |
|---|---|
| date | Wed, 10 Sep 2014 10:33:29 -0400 |
| parents | 74d2bc479bee |
| children | 069419cccba4 |
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| 1:856b5b718d21 | 2:2f4298673519 |
|---|---|
| 1 import re | 1 import re |
| 2 import argparse | 2 import argparse |
| 3 | 3 import time |
| 4 starttime= int(time.time() * 1000) | |
| 4 | 5 |
| 5 parser = argparse.ArgumentParser() | 6 parser = argparse.ArgumentParser() |
| 6 parser.add_argument("--input", help="The 1_Summary file from an IMGT zip file") | 7 parser.add_argument("--input", help="The 1_Summary file from an IMGT zip file") |
| 7 parser.add_argument("--outdir", help="Output directory, 7 output files will be written here") | 8 parser.add_argument("--outdir", help="Output directory, 7 output files will be written here") |
| 8 | 9 |
| 253 unmatchedfile.close() | 254 unmatchedfile.close() |
| 254 | 255 |
| 255 | 256 |
| 256 #print ca,cg,cm,(ca+cg+cm) | 257 #print ca,cg,cm,(ca+cg+cm) |
| 257 | 258 |
| 258 | 259 print "Time: %i" % (int(time.time() * 1000) - starttime) |
| 259 | 260 |
| 260 | 261 |
| 261 | 262 |
| 262 | 263 |
| 263 | 264 |
| 264 | 265 |
| 265 | 266 |