Mercurial > repos > davidvanzessen > mutation_analysis

comparison wrapper.sh @ 16:2bb24ebbbc38 draft

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author davidvanzessen
date Mon, 30 Mar 2015 07:51:50 -0400
parents 8a40634fd4b3
children c518cf0d4adb
comparison
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15:8a40634fd4b3 16:2bb24ebbbc38
11 cat $PWD/files/*/1_* > $PWD/summary.txt 11 cat $PWD/files/*/1_* > $PWD/summary.txt
12 cat $PWD/files/*/7_* > $PWD/mutationanalysis.txt 12 cat $PWD/files/*/7_* > $PWD/mutationanalysis.txt
13 cat $PWD/files/*/8_* > $PWD/mutationstats.txt 13 cat $PWD/files/*/8_* > $PWD/mutationstats.txt
14 cat $PWD/files/*/10_* > $PWD/hotspots.txt 14 cat $PWD/files/*/10_* > $PWD/hotspots.txt
15 15
16 echo "${BLASTN_DIR}" 16 echo "${BLASTN}"
17 17
18 18
19 echo "identification" 19 echo "identification"
20 python $dir/gene_identification.py --input $PWD/summary.txt --output $outdir/annotatedsummary.txt 20 python $dir/gene_identification.py --input $PWD/summary.txt --output $outdir/annotatedsummary.txt
21 echo "merging" 21 echo "merging"