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comparison wrapper.sh @ 79:0513b46178c4 draft

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author davidvanzessen
date Thu, 12 May 2016 07:35:07 -0400
parents b523ce95d857
children a4c2ddeadec0
comparison
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78:b523ce95d857 79:0513b46178c4
140 tmp=`cat $outdir/${gene}_${func}_n.txt` 140 tmp=`cat $outdir/${gene}_${func}_n.txt`
141 echo "<th><a href='matched_${gene}_${func}.txt'>${gene} (N = $tmp)</a></th>" >> $output 141 echo "<th><a href='matched_${gene}_${func}.txt'>${gene} (N = $tmp)</a></th>" >> $output
142 done 142 done
143 143
144 tmp=`cat $outdir/unmatched_${func}_n.txt` 144 tmp=`cat $outdir/unmatched_${func}_n.txt`
145 echo "<th><a href='unmatched.txt'>unmatched (N = $tmp)</a></th>" >> $output 145 echo "<th><a href='unmatched.txt'>unmatched (N = ${unmatched_count})</a></th>" >> $output
146 tmp=`cat $outdir/all_${func}_n.txt` 146 tmp=`cat $outdir/all_${func}_n.txt`
147 echo "<th><a href='matched_${func}_all.txt'>all (N = $tmp)</a></th>" >> $output 147 echo "<th><a href='matched_${func}_all.txt'>all (N = $tmp)</a></th>" >> $output
148 148
149 while IFS=, read name cax cay caz ca1x ca1y ca1z ca2x ca2y ca2z cgx cgy cgz cg1x cg1y cg1z cg2x cg2y cg2z cg3x cg3y cg3z cg4x cg4y cg4z cmx cmy cmz unx uny unz allx ally allz 149 while IFS=, read name cax cay caz ca1x ca1y ca1z ca2x ca2y ca2z cgx cgy cgz cg1x cg1y cg1z cg2x cg2y cg2z cg3x cg3y cg3z cg4x cg4y cg4z cmx cmy cmz unx uny unz allx ally allz
150 do 150 do