--- a/imgtconvert.sh	Mon Jul 07 09:54:42 2014 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,57 +0,0 @@
-#!/bin/bash
-dir="$(cd "$(dirname "$0")" && pwd)"
-mkdir $PWD/files
-
-
-#!/bin/bash
-f=$(file $1)
-zip7Type="7-zip archive"
-tarType="tar archive"
-bzip2Type="bzip2 compressed"
-gzipType="gzip compressed"
-zipType="Zip archive"
-rarType="RAR archive"
-
-if [[ "$f" == *"$zip7Type"* ]]; then
-	echo "7-zip"
-	echo "Trying: 7za e $1 -o$PWD/files/"
-	7za e $1 -o$PWD/files/
-fi
-
-if [[ "$f" == *"$tarType"* ]]
-then
-	echo "tar archive"
-	echo "Trying: tar xvf $1 -C $PWD/files/"
-	tar xvf $1 -C $PWD/files/
-fi
-
-if [[ "$f" == *"$bzip2Type"* ]]
-then
-	echo "bzip2 compressed data"
-	echo "Trying: tar jxf $1 -C $PWD/files/"
-	tar jxf $1 -C $PWD/files/
-fi
-
-if [[ "$f" == *"$gzipType"* ]]
-then
-	echo "gzip compressed data"
-	echo "Trying: tar xvzf $1 -C $PWD/files/"
-	tar xvzf $1 -C $PWD/files/
-fi
-
-if [[ "$f" == *"$zipType"* ]]
-then
-	echo "Zip archive"
-	echo "Trying: unzip $1 -d $PWD/files/"
-	unzip $1 -d $PWD/files/ > $PWD/unziplog.log
-fi
-
-if [[ "$f" == *"$rarType"* ]]
-then
-	echo "RAR archive"
-	echo "Trying: unrar e $1 $PWD/files/"
-	unrar e $1 $PWD/files/
-fi
-find $PWD/files/ -type f |  grep -v "1_Summary_\|5_AA-sequences_\|6_Junction_" | xargs rm -f
-python $dir/imgtconvert.py --input $PWD/files --output $2
-