# HG changeset patch
# User davidvanzessen
# Date 1389177898 18000
# Node ID a7fe6f068f8379a3713a56158ba3073a36d1999f
# Parent  a43100e5d0327ae577bd7a61a7292386b43fca21
Uploaded

diff -r a43100e5d032 -r a7fe6f068f83 imgtconvert.py
--- a/imgtconvert.py	Tue Dec 10 07:55:34 2013 -0500
+++ b/imgtconvert.py	Wed Jan 08 05:44:58 2014 -0500
@@ -132,7 +132,7 @@
 tmp = tmp.replace("null", "Out-of-frame")
 tmp = tmp.replace("out-of-frame", "Out-of-frame")
 outFrame["VDJ Frame"] = tmp
-outFrame["CDR3 Length"] = outFrame["CDR3 Seq DNA"].map(str).map(len)
+outFrame["CDR3 Length DNA"] = outFrame["CDR3 Seq DNA"].map(str).map(len)
 safeLength = lambda x: len(x) if type(x) == str else 0
 outFrame = outFrame[(outFrame["CDR3 Seq DNA"].map(safeLength) > 0) & (outFrame["Top V Gene"] != "NA") & (outFrame["Top D Gene"] != "NA") & (outFrame["Top J Gene"] != "NA")] #filter out weird rows?
-outFrame.to_csv(outFile, sep="\t", index=False)
\ No newline at end of file
+outFrame.to_csv(outFile, sep="\t", index=False, index_label="index")
\ No newline at end of file