Mercurial > repos > davidvanzessen > igblastn_immunerepertoire_igg

diff combined.sh @ 3:6364030a16b8 draft
Uploaded
author: davidvanzessen
date: Fri, 24 Jan 2014 04:02:33 -0500
parents: 364b169ffb30
children: 2f2544607ad6
--- a/combined.sh	Thu Jan 23 08:30:59 2014 -0500
+++ b/combined.sh	Fri Jan 24 04:02:33 2014 -0500
@@ -1,10 +1,5 @@
 #!/bin/bash
 
-mkdir $PWD/igblastdatabase
-unzip $dir/database.zip -d $PWD/igblastdatabase/
-
-export IGDATA=$PWD/igblastdatabase/
-
 clonalType=${@:(-3):1}
 html=${@:(-2):1}
 imageDir=${@:(-1):1}
@@ -15,7 +10,9 @@
 echo "<html><h3>Progress</h3><table><tr><td>info</td></tr>" > $html
 echo "<tr><td>-----------------------------------</td></tr>" >> $html
 
-
+mkdir $PWD/igblastdatabase
+unzip $dir/database.zip -d $PWD/igblastdatabase/
+export IGDATA=$PWD/igblastdatabase/
 
 function blastAndParse {
 	echo "<tr><td>Starting blast of sample $3 of patient $2</td></tr>" >> $html