Mercurial > repos > davidvanzessen > igblast_human

changeset 19:798c2fbb74c0 draft

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Uploaded
author davidvanzessen
date Tue, 24 Sep 2013 08:22:39 -0400
parents 6c21de437cfd
children e132e407f9b7
files tool_dependencies.xml
diffstat 1 files changed, 19 insertions(+), 7 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependencies.xml	Tue Sep 24 08:09:44 2013 -0400
+++ b/tool_dependencies.xml	Tue Sep 24 08:22:39 2013 -0400
@@ -21,17 +21,29 @@
                 	<environment_variable name="IGDATA" action="set_to">$INSTALL_DIR</environment_variable>
                 </action>
                 
-				<action type="download_by_url">
-            		ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data
+                <action type="make_directory">
+                	$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data
+                </action>
+                <action type="make_directory">
+                	$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human
+                </action>
+                
+                
+                <action type="download_by_url">
+            		ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_V*
             	</action>
-            	<action type="move_directory_files">
-            		<source_directory>internal_data</source_directory>
-            		<destination_directory>$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data</destination_directory>
-            	</action>
+            	<action type="move_file">
+		    		<source>
+		    			human_V*
+		    		</source>
+			   		<destination>
+			   			$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human
+			   		</destination>
+	       		</action>
             </actions>
         </install>
         <readme>
-			Installs R with apt-get.
+			Downloads igBlast with the human_V internal data file.
         </readme>
     </package>
 </tool_dependency>