Mercurial > repos > davidvanzessen > igblast_human

changeset 24:5ae33d75f4bd draft

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Uploaded
author davidvanzessen
date Tue, 24 Sep 2013 08:58:56 -0400
parents 84addbc152e0
children b1a2bef435a1
files tool_dependencies.xml
diffstat 1 files changed, 33 insertions(+), 0 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependencies.xml	Tue Sep 24 08:55:37 2013 -0400
+++ b/tool_dependencies.xml	Tue Sep 24 08:58:56 2013 -0400
@@ -9,8 +9,41 @@
             	<action type="download_by_url" target_filename="ncbi-igblast-1.0.0-x64-linux.tar.gz">
             		ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/1.0.0/ncbi-igblast-1.0.0-x64-linux.tar.gz
             	</action>
+            	
+            	
+            	<action type="move_directory_files">
+		    		<source_directory>
+		    			ncbi-igblast-1.0.0
+		    		</source_directory>
+			   		<destination_director>
+			   			$INSTALL_DIR/nzbi-igblast-1.0.0
+			   		</destination_director>
+	       		</action>
+                <action type="set_environment">
+                	<environment_variable name="IGDATA" action="set_to">$INSTALL_DIR</environment_variable>
+                </action>
+                
+                <action type="make_directory">
+                	$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data
+                </action>
+                <action type="make_directory">
+                	$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human
+                </action>
 
 
+                <action type="download_by_url">
+            		ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_V*
+            	</action>
+            	<action type="move_file">
+		    		<source>
+		    			human_V*
+		    		</source>
+			   		<destination>
+			   			$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human
+			   		</destination>
+	       		</action>
+	       		
+	       		
             </actions>
         </install>
         <readme>