Mercurial > repos > davidvanzessen > igblast_human

changeset 56:33cba576e8be draft

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Uploaded
author davidvanzessen
date Thu, 23 Jan 2014 06:03:47 -0500
parents 99541760fdfe
children 720a09103f44
files tool_dependencies.xml
diffstat 1 files changed, 2 insertions(+), 12 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependencies.xml	Thu Jan 23 05:35:59 2014 -0500
+++ b/tool_dependencies.xml	Thu Jan 23 06:03:47 2014 -0500
@@ -6,18 +6,8 @@
 	<package name="igBlastn" version="1.0.0"> 
         <install version="1.0">
             <actions>
-            	<action type="download_by_url" target_filename="ncbi-igblast-1.0.0-x64-linux.tar.gz">
-            		ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/1.0.0/ncbi-igblast-1.0.0-x64-linux.tar.gz
-            	</action>
-            	
-            	
-            	<action type="move_directory_files">
-		    		<source_directory>ncbi-igblast-1.0.0</source_directory>
-			   		<destination_directory>$INSTALL_DIR/ncbi-igblast-1.0.0</destination_directory>
-	       		</action>
-                <action type="set_environment">
-                	<environment_variable name="IGDATA" action="set_to">$INSTALL_DIR/ncbi-igblast-1.0.0</environment_variable>
-                </action>
+            	<action type="download_by_url" target_filename="ncbi-igblast-1.0.0-x64-linux.tar.gz">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/1.0.0/ncbi-igblast-1.0.0-x64-linux.tar.gz</action>
+            	<action type="shell_command">tar zxvf ncbi-igblast-1.0.0-x64-linux.tar.gz -C $INSTALL_DIR</action>
                 <action type="set_environment">
                 	<environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/ncbi-igblast-1.0.0/bin</environment_variable>
                 </action>