Mercurial > repos > davidvanzessen > igblast_human

changeset 39:112299940b50 draft

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Uploaded
author davidvanzessen
date Tue, 24 Sep 2013 10:49:22 -0400
parents cc443e49b89e
children 1369672de2ce
files igblastn.xml~
diffstat 1 files changed, 0 insertions(+), 19 deletions(-) [+]
line wrap: on
line diff
--- a/igblastn.xml~	Tue Sep 24 10:48:34 2013 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,19 +0,0 @@
-<tool id="igblastn" name="igBLASTn" version="0.1.0">
-    <description>Run igBLASTn</description>
-    <command>
-    igblastn -germline_db_V /usr/local/ncbi-igblast-1.0.0/database/human_gl_V -germline_db_J /usr/local/ncbi-igblast-1.0.0/database/human_gl_J -germline_db_D /usr/local/ncbi-igblast-1.0.0/database/human_gl_D -domain_system imgt -query $input -auxiliary_data /usr/local/ncbi-igblast-1.0.0/optional_file/human_gl.aux -show_translation -outfmt 3 > $output
-    </command>
-    <inputs>
-        <param name="input" type="data" format="fasta" label="Fasta file"/>
-    </inputs>
-    <outputs>
-        <data name="output" format="text" label="${input.name}-igBLASTn Report"/>
-	<!--<data name="log" format="text" label="log"/>-->
-    </outputs>
-	<requirements>
-		<requirement type="package" version="1.0.0">igBlastn</requirement>
-	</requirements>
-    <help>
-        there is no help
-    </help>
-</tool>