view tool_dependencies.xml @ 21:895fb8c46268 draft

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author davidvanzessen
date Tue, 24 Sep 2013 08:40:51 -0400
parents e132e407f9b7
children 43aa546ce45e
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<?xml version="1.0"?>
<tool_dependency>
	<set_environment version="1.0">            
    </set_environment>
    
	<package name="igBlastn" version="1.0.0"> 
        <install version="1.0">
            <actions>
            	<action type="download_by_url">
            		ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/1.0.0/ncbi-igblast-1.0.0-x64-linux.tar.gz
            	</action>
            	<action type="move_directory_files">
		    		<source_directory>
		    			ncbi-igblast-1.0.0
		    		</source_directory>
			   		<destination_director>
			   			$INSTALL_DIR/nzbi-igblast-1.0.0
			   		</destination_director>
	       		</action>
                <action type="set_environment">
                	<environment_variable name="IGDATA" action="set_to">$INSTALL_DIR</environment_variable>
                </action>
                
                <action type="make_directory">
                	$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data
                </action>
                <action type="make_directory">
                	$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human
                </action>

            </actions>
        </install>
        <readme>
			Downloads igBlast with the human_V internal data file.
        </readme>
    </package>
</tool_dependency>