Mercurial > repos > davidvanzessen > igblast_human
view tool_dependencies.xml @ 31:7184bad4cd67 draft
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author | davidvanzessen |
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date | Tue, 24 Sep 2013 09:32:22 -0400 |
parents | 545fe4cd9170 |
children | a8a3bb59d0f9 |
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<?xml version="1.0"?> <tool_dependency> <set_environment version="1.0"> </set_environment> <package name="igBlastn" version="1.0.0"> <install version="1.0"> <actions> <action type="download_by_url" target_filename="ncbi-igblast-1.0.0-x64-linux.tar.gz"> ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/1.0.0/ncbi-igblast-1.0.0-x64-linux.tar.gz </action> <action type="move_directory_files"> <source_directory>ncbi-igblast-1.0.0</source_directory> <destination_directory>$INSTALL_DIR/ncbi-igblast-1.0.0</destination_directory> </action> <action type="set_environment"> <environment_variable name="IGDATA" action="set_to">$INSTALL_DIR/ncbi-igblast-1.0.0</environment_variable> </action> <action type="make_directory">$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data</action> <action type="make_directory">$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</action> <action type="download_by_url"> ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_V* </action> <action type="move_file"> <source>human_V*</source> <destination>$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human/</destination> </action> <action type="move_directory_files"> <source_directory></source_directory> <destination_directory>$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</destination_directory> </action> </actions> </install> <readme> Downloads igBlast with the human_V internal data file. </readme> </package> </tool_dependency>