view tool_dependencies.xml @ 31:7184bad4cd67 draft

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author davidvanzessen
date Tue, 24 Sep 2013 09:32:22 -0400
parents 545fe4cd9170
children a8a3bb59d0f9
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<?xml version="1.0"?>
<tool_dependency>
	<set_environment version="1.0">            
    </set_environment>
    
	<package name="igBlastn" version="1.0.0"> 
        <install version="1.0">
            <actions>
            	<action type="download_by_url" target_filename="ncbi-igblast-1.0.0-x64-linux.tar.gz">
            		ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/1.0.0/ncbi-igblast-1.0.0-x64-linux.tar.gz
            	</action>
            	
            	
            	<action type="move_directory_files">
		    		<source_directory>ncbi-igblast-1.0.0</source_directory>
			   		<destination_directory>$INSTALL_DIR/ncbi-igblast-1.0.0</destination_directory>
	       		</action>
                <action type="set_environment">
                	<environment_variable name="IGDATA" action="set_to">$INSTALL_DIR/ncbi-igblast-1.0.0</environment_variable>
                </action>
                
                <action type="make_directory">$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data</action>
                <action type="make_directory">$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</action>

                <action type="download_by_url">
            		ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_V*
            	</action>
            	<action type="move_file">
		    		<source>human_V*</source>
			   		<destination>$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human/</destination>
	       		</action>
	       		<action type="move_directory_files">
		    		<source_directory></source_directory>
			   		<destination_directory>$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</destination_directory>
	       		</action>
            </actions>
        </install>
        <readme>
			Downloads igBlast with the human_V internal data file.
        </readme>
    </package>
</tool_dependency>