Mercurial > repos > davidvanzessen > igblast_human
view tool_dependencies.xml @ 48:651d7749461c draft
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author | davidvanzessen |
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date | Wed, 27 Nov 2013 06:45:56 -0500 |
parents | 5c8fb1e23a02 |
children | 1979cf09c932 |
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<?xml version="1.0"?> <tool_dependency> <set_environment version="1.0"> </set_environment> <package name="igBlastn" version="1.0.0"> <install version="1.0"> <actions> <action type="make_directory">$INSTALL_DIR/ncbi-igblast-1.0.0</action> <action type="make_directory">$INSTALL_DIR/ncbi-igblast-1.0.0/bin</action> <action type="download_by_url" target_filename="ncbi-igblast-1.0.0-x64-linux.tar.gz"> ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/1.0.0/ncbi-igblast-1.0.0-x64-linux.tar.gz </action> <action type="move_directory_files"> <source_directory>ncbi-igblast-1.0.0</source_directory> <destination_directory>$INSTALL_DIR/ncbi-igblast-1.0.0</destination_directory> </action> <action type="set_environment"> <environment_variable name="IGDATA" action="set_to">$INSTALL_DIR/ncbi-igblast-1.0.0</environment_variable> </action> <action type="set_environment"> <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/ncbi-igblast-1.0.0/bin</environment_variable> </action> <action type="shell_command">unzip $REPOSITORY_INSTALL_DIRECTORY/database.zip -d $INSTALL_DIR/ncbi-igblast-1.0.0/</action> </actions> </install> <readme> Downloads igBlast with the latest database provided by NCBI, output may change depending on the database available at ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/ </readme> </package> </tool_dependency>