Mercurial > repos > davidvanzessen > igblast_human
view tool_dependencies.xml @ 61:39a916965683 draft
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author | davidvanzessen |
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date | Thu, 23 Jan 2014 08:32:42 -0500 |
parents | 76df2ddba956 |
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<?xml version="1.0"?> <tool_dependency> <set_environment version="1.0"> </set_environment> <package name="igBlastn" version="1.0.0"> <install version="1.0"> <actions> <action type="shell_command">wget ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/1.0.0/ncbi-igblast-1.0.0-x64-linux.tar.gz -P $INSTALL_DIR</action> <action type="shell_command">tar zxvf $INSTALL_DIR/ncbi-igblast-1.0.0-x64-linux.tar.gz -C $INSTALL_DIR</action> <action type="set_environment"> <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/ncbi-igblast-1.0.0/bin</environment_variable> </action> </actions> </install> <readme> Downloads the igblastn-1.0.0 executable from NCBI and uses a fixed database included in this tool. </readme> </package> </tool_dependency>