Mercurial > repos > davidvanzessen > igblast_human

diff igblastn.sh @ 60:3c52ce2256c7 draft

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Uploaded
author davidvanzessen
date Thu, 23 Jan 2014 07:50:56 -0500
parents 99541760fdfe
children a700a552f031
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--- a/igblastn.sh	Thu Jan 23 07:25:03 2014 -0500
+++ b/igblastn.sh	Thu Jan 23 07:50:56 2014 -0500
@@ -4,4 +4,6 @@
 mkdir $PWD/igblastdatabase
 unzip $dir/database.zip -d $PWD/igblastdatabase/
 
+export IGDATA=$PWD/igblastdatabase/
+
 igblastn -germline_db_V $PWD/igblastdatabase/database/human_gl_V -germline_db_J $PWD/igblastdatabase/database/human_gl_J -germline_db_D $PWD/igblastdatabase/database/human_gl_D -domain_system imgt -query $1 -auxiliary_data $PWD/igblastdatabase/optional_file/human_gl.aux -show_translation -outfmt 3 > $2