--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/igblastn.xml~	Tue Sep 24 10:42:31 2013 -0400
@@ -0,0 +1,19 @@
+<tool id="igblastn" name="igBLASTn" version="0.1.0">
+    <description>Run igBLASTn</description>
+    <command>
+    igblastn -germline_db_V /usr/local/ncbi-igblast-1.0.0/database/human_gl_V -germline_db_J /usr/local/ncbi-igblast-1.0.0/database/human_gl_J -germline_db_D /usr/local/ncbi-igblast-1.0.0/database/human_gl_D -domain_system imgt -query $input -auxiliary_data /usr/local/ncbi-igblast-1.0.0/optional_file/human_gl.aux -show_translation -outfmt 3 > $output
+    </command>
+    <inputs>
+        <param name="input" type="data" format="fasta" label="Fasta file"/>
+    </inputs>
+    <outputs>
+        <data name="output" format="text" label="${input.name}-igBLASTn Report"/>
+	<!--<data name="log" format="text" label="log"/>-->
+    </outputs>
+	<requirements>
+		<requirement type="package" version="1.0.0">igBlastn</requirement>
+	</requirements>
+    <help>
+        there is no help
+    </help>
+</tool>