Mercurial > repos > davidvanzessen > igblast_human

comparison tool_dependencies.xml @ 58:ff96687f4a15 draft

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author davidvanzessen
date Thu, 23 Jan 2014 07:17:40 -0500
parents 720a09103f44
children 76df2ddba956
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57:720a09103f44 58:ff96687f4a15
9 <action type="download_by_url" target_filename="ncbi-igblast-1.0.0-x64-linux.tar.gz">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/1.0.0/ncbi-igblast-1.0.0-x64-linux.tar.gz</action> 9 <action type="download_by_url" target_filename="ncbi-igblast-1.0.0-x64-linux.tar.gz">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/1.0.0/ncbi-igblast-1.0.0-x64-linux.tar.gz</action>
10 <action type="move_file"> 10 <action type="move_file">
11 <source>ncbi-igblast-1.0.0-x64-linux.tar.gz</source> 11 <source>ncbi-igblast-1.0.0-x64-linux.tar.gz</source>
12 <destination>$INSTALL_DIR</destination> 12 <destination>$INSTALL_DIR</destination>
13 </action> 13 </action>
14 <action type="shell_command">wget ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/1.0.0/ncbi-igblast-1.0.0-x64-linux.tar.gz -P $INSTALL_DIR</action>
14 <action type="shell_command">tar zxvf $INSTALL_DIR/ncbi-igblast-1.0.0-x64-linux.tar.gz -C $INSTALL_DIR</action> 15 <action type="shell_command">tar zxvf $INSTALL_DIR/ncbi-igblast-1.0.0-x64-linux.tar.gz -C $INSTALL_DIR</action>
15 <action type="set_environment"> 16 <action type="set_environment">
16 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/ncbi-igblast-1.0.0/bin</environment_variable> 17 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/ncbi-igblast-1.0.0/bin</environment_variable>
17 </action> 18 </action>
18 </actions> 19 </actions>