Mercurial > repos > davidvanzessen > igblast_human

comparison tool_dependencies.xml @ 46:9ed2773166cf draft

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author davidvanzessen
date Fri, 22 Nov 2013 07:40:00 -0500
parents 02de9290e324
children 5c8fb1e23a02
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45:02de9290e324 46:9ed2773166cf
21 <environment_variable name="IGDATA" action="set_to">$INSTALL_DIR/ncbi-igblast-1.0.0</environment_variable> 21 <environment_variable name="IGDATA" action="set_to">$INSTALL_DIR/ncbi-igblast-1.0.0</environment_variable>
22 </action> 22 </action>
23 <action type="set_environment"> 23 <action type="set_environment">
24 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/ncbi-igblast-1.0.0/bin</environment_variable> 24 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/ncbi-igblast-1.0.0/bin</environment_variable>
25 </action> 25 </action>
26 <action type="shell_command">echo "$PWD"</action>
27 <action type="shell_command">var=$("ls")</action>
28 <action type="shell_command">echo "$var"</action>
26 <action type="shell_command">unzip database.zip -d $INSTALL_DIR/ncbi-igblast-1.0.0/</action> 29 <action type="shell_command">unzip database.zip -d $INSTALL_DIR/ncbi-igblast-1.0.0/</action>
27 30
28 31
29 </actions> 32 </actions>
30 </install> 33 </install>