Mercurial > repos > davidvanzessen > igblast_human

comparison tool_dependencies.xml @ 55:99541760fdfe draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author davidvanzessen
date Thu, 23 Jan 2014 05:35:59 -0500
parents ddc765e7142c
children 33cba576e8be
comparison
equal deleted inserted replaced
54:ddc765e7142c 55:99541760fdfe
19 <environment_variable name="IGDATA" action="set_to">$INSTALL_DIR/ncbi-igblast-1.0.0</environment_variable> 19 <environment_variable name="IGDATA" action="set_to">$INSTALL_DIR/ncbi-igblast-1.0.0</environment_variable>
20 </action> 20 </action>
21 <action type="set_environment"> 21 <action type="set_environment">
22 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/ncbi-igblast-1.0.0/bin</environment_variable> 22 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/ncbi-igblast-1.0.0/bin</environment_variable>
23 </action> 23 </action>
24
25 <action type="make_directory">$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data</action>
26 <action type="make_directory">$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</action>
27
28 <action type="shell_command">wget -r -np -nH --cut-dirs=4 -R index.html -P $INSTALL_DIR/ncbi-igblast-1.0.0 "ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data"</action>
29
30 <action type="shell_command">wget -r -np -nH --cut-dirs=4 -R index.html -P $INSTALL_DIR/ncbi-igblast-1.0.0 "ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/database"</action>
31
32 <action type="shell_command">wget -r -np -nH --cut-dirs=4 -R index.html -P $INSTALL_DIR/ncbi-igblast-1.0.0 "ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/optional_file"</action>
33
34 </actions> 24 </actions>
35 </install> 25 </install>
36 <readme> 26 <readme>
37 Downloads igBlast with the latest database provided by NCBI, output may change depending on the database available at ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/ 27 Downloads the igblastn-1.0.0 executable from NCBI and uses a fixed database included in this tool.
38 </readme> 28 </readme>
39 </package> 29 </package>
40 </tool_dependency> 30 </tool_dependency>