Mercurial > repos > davidvanzessen > igblast_human

comparison tool_dependencies.xml @ 19:798c2fbb74c0 draft

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author davidvanzessen
date Tue, 24 Sep 2013 08:22:39 -0400
parents 6c21de437cfd
children e132e407f9b7
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18:6c21de437cfd 19:798c2fbb74c0
19 </action> 19 </action>
20 <action type="set_environment"> 20 <action type="set_environment">
21 <environment_variable name="IGDATA" action="set_to">$INSTALL_DIR</environment_variable> 21 <environment_variable name="IGDATA" action="set_to">$INSTALL_DIR</environment_variable>
22 </action> 22 </action>
23 23
24 <action type="download_by_url"> 24 <action type="make_directory">
25 ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data 25 $INSTALL_DIR/ncbi-igblast-1.0.0/internal_data
26 </action>
27 <action type="make_directory">
28 $INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human
29 </action>
30
31
32 <action type="download_by_url">
33 ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_V*
26 </action> 34 </action>
27 <action type="move_directory_files"> 35 <action type="move_file">
28 <source_directory>internal_data</source_directory> 36 <source>
29 <destination_directory>$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data</destination_directory> 37 human_V*
30 </action> 38 </source>
39 <destination>
40 $INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human
41 </destination>
42 </action>
31 </actions> 43 </actions>
32 </install> 44 </install>
33 <readme> 45 <readme>
34 Installs R with apt-get. 46 Downloads igBlast with the human_V internal data file.
35 </readme> 47 </readme>
36 </package> 48 </package>
37 </tool_dependency> 49 </tool_dependency>
38 50