Mercurial > repos > davidvanzessen > igblast_human

comparison tool_dependencies.xml @ 59:76df2ddba956 draft

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author davidvanzessen
date Thu, 23 Jan 2014 07:25:03 -0500
parents ff96687f4a15
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58:ff96687f4a15 59:76df2ddba956
4 </set_environment> 4 </set_environment>
5 5
6 <package name="igBlastn" version="1.0.0"> 6 <package name="igBlastn" version="1.0.0">
7 <install version="1.0"> 7 <install version="1.0">
8 <actions> 8 <actions>
9 <action type="download_by_url" target_filename="ncbi-igblast-1.0.0-x64-linux.tar.gz">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/1.0.0/ncbi-igblast-1.0.0-x64-linux.tar.gz</action>
10 <action type="move_file">
11 <source>ncbi-igblast-1.0.0-x64-linux.tar.gz</source>
12 <destination>$INSTALL_DIR</destination>
13 </action>
14 <action type="shell_command">wget ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/1.0.0/ncbi-igblast-1.0.0-x64-linux.tar.gz -P $INSTALL_DIR</action> 9 <action type="shell_command">wget ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/1.0.0/ncbi-igblast-1.0.0-x64-linux.tar.gz -P $INSTALL_DIR</action>
15 <action type="shell_command">tar zxvf $INSTALL_DIR/ncbi-igblast-1.0.0-x64-linux.tar.gz -C $INSTALL_DIR</action> 10 <action type="shell_command">tar zxvf $INSTALL_DIR/ncbi-igblast-1.0.0-x64-linux.tar.gz -C $INSTALL_DIR</action>
16 <action type="set_environment"> 11 <action type="set_environment">
17 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/ncbi-igblast-1.0.0/bin</environment_variable> 12 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/ncbi-igblast-1.0.0/bin</environment_variable>
18 </action> 13 </action>