Mercurial > repos > davidvanzessen > igblast_human

comparison tool_dependencies.xml @ 42:46fbf2f2d1aa draft

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author davidvanzessen
date Thu, 26 Sep 2013 10:26:59 -0400
parents 12de5aa44543
children 02de9290e324
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41:12de5aa44543 42:46fbf2f2d1aa
16 <destination_directory>$INSTALL_DIR/ncbi-igblast-1.0.0</destination_directory> 16 <destination_directory>$INSTALL_DIR/ncbi-igblast-1.0.0</destination_directory>
17 </action> 17 </action>
18 <action type="set_environment"> 18 <action type="set_environment">
19 <environment_variable name="IGDATA" action="set_to">$INSTALL_DIR/ncbi-igblast-1.0.0</environment_variable> 19 <environment_variable name="IGDATA" action="set_to">$INSTALL_DIR/ncbi-igblast-1.0.0</environment_variable>
20 </action> 20 </action>
21 <action type="set_environment">
22 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/ncbi-igblast-1.0.0/bin</environment_variable>
23 </action>
21 24
22 <action type="make_directory">$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data</action> 25 <action type="make_directory">$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data</action>
23 <action type="make_directory">$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</action> 26 <action type="make_directory">$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</action>
24 27
25 <action type="shell_command">wget -r -np -nH --cut-dirs=4 -R index.html -P $INSTALL_DIR/ncbi-igblast-1.0.0 "ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data"</action> 28 <action type="shell_command">wget -r -np -nH --cut-dirs=4 -R index.html -P $INSTALL_DIR/ncbi-igblast-1.0.0 "ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data"</action>