Mercurial > repos > davidvanzessen > igblast_human

comparison igblastn.xml @ 42:46fbf2f2d1aa draft

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Uploaded
author davidvanzessen
date Thu, 26 Sep 2013 10:26:59 -0400
parents 215aa111db64
children 1c64c977624e
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41:12de5aa44543 42:46fbf2f2d1aa
1 <tool id="igblastn" name="igBLASTn" version="0.1.0"> 1 <tool id="igblastn" name="igBLASTn" version="0.1.0">
2 <description>Run igBLASTn</description> 2 <description>Run igBLASTn</description>
3 <command> 3 <command>
4 igblastn -germline_db_V \$IGDATA/database/human_gl_V -germline_db_J \$IGDATA/database/human_gl_J -germline_db_D \$IGDATA/database/human_gl_D -domain_system imgt -query $input -auxiliary_data \$IGDATA/optional_file/human_gl.aux -show_translation -outfmt 3 > $output 4 igblastn -germline_db_V \$IGDATA/database/human_gl_V -germline_db_J \$IGDATA/database/human_gl_J -germline_db_D \$IGDATA/database/human_gl_D -domain_system imgt -query $input -auxiliary_data \$IGDATA/optional_file/human_gl.aux -show_translation -outfmt 3 > $output
5 </command> 5 </command>
6 <inputs> 6 <inputs>
7 <param name="input" type="data" format="fasta" label="Fasta file"/> 7 <param name="input" type="data" format="fasta" label="Fasta file"/>
8 </inputs> 8 </inputs>
9 <outputs> 9 <outputs>