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comparison igblastn.xml @ 2:40954f0f8d14 draft

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Uploaded
author davidvanzessen
date Tue, 24 Sep 2013 04:01:28 -0400
parents 0ccde52e24a1
children 215aa111db64
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1:0ccde52e24a1 2:40954f0f8d14
1 <tool id="igblastn" name="igBLASTn" version="0.1.0"> 1 <tool id="igblastn" name="igBLASTn" version="0.1.0">
2 <description>Run igBLASTn</description> 2 <description>Run igBLASTn</description>
3 <command> 3 <command>
4 export IGDATA=/usr/local/ncbi-igblast-1.0.0/;
5 igblastn -germline_db_V /usr/local/ncbi-igblast-1.0.0/database/human_gl_V -germline_db_J /usr/local/ncbi-igblast-1.0.0/database/human_gl_J -germline_db_D /usr/local/ncbi-igblast-1.0.0/database/human_gl_D -domain_system imgt -query $input -auxiliary_data /usr/local/ncbi-igblast-1.0.0/optional_file/human_gl.aux -show_translation -outfmt 3 > $output 4 igblastn -germline_db_V /usr/local/ncbi-igblast-1.0.0/database/human_gl_V -germline_db_J /usr/local/ncbi-igblast-1.0.0/database/human_gl_J -germline_db_D /usr/local/ncbi-igblast-1.0.0/database/human_gl_D -domain_system imgt -query $input -auxiliary_data /usr/local/ncbi-igblast-1.0.0/optional_file/human_gl.aux -show_translation -outfmt 3 > $output
6 </command> 5 </command>
7 <inputs> 6 <inputs>
8 <param name="input" type="data" format="fasta" label="Fasta file"/> 7 <param name="input" type="data" format="fasta" label="Fasta file"/>
9 </inputs> 8 </inputs>