Mercurial > repos > davidvanzessen > igblast_human
comparison igblastn.xml~ @ 37:215aa111db64 draft
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| author | davidvanzessen |
|---|---|
| date | Tue, 24 Sep 2013 10:42:31 -0400 |
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| children |
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| 36:1d15cd0bd913 | 37:215aa111db64 |
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| 1 <tool id="igblastn" name="igBLASTn" version="0.1.0"> | |
| 2 <description>Run igBLASTn</description> | |
| 3 <command> | |
| 4 igblastn -germline_db_V /usr/local/ncbi-igblast-1.0.0/database/human_gl_V -germline_db_J /usr/local/ncbi-igblast-1.0.0/database/human_gl_J -germline_db_D /usr/local/ncbi-igblast-1.0.0/database/human_gl_D -domain_system imgt -query $input -auxiliary_data /usr/local/ncbi-igblast-1.0.0/optional_file/human_gl.aux -show_translation -outfmt 3 > $output | |
| 5 </command> | |
| 6 <inputs> | |
| 7 <param name="input" type="data" format="fasta" label="Fasta file"/> | |
| 8 </inputs> | |
| 9 <outputs> | |
| 10 <data name="output" format="text" label="${input.name}-igBLASTn Report"/> | |
| 11 <!--<data name="log" format="text" label="log"/>--> | |
| 12 </outputs> | |
| 13 <requirements> | |
| 14 <requirement type="package" version="1.0.0">igBlastn</requirement> | |
| 15 </requirements> | |
| 16 <help> | |
| 17 there is no help | |
| 18 </help> | |
| 19 </tool> |