Mercurial > repos > davidvanzessen > igblast_human

comparison igblastn.xml @ 37:215aa111db64 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author davidvanzessen
date Tue, 24 Sep 2013 10:42:31 -0400
parents 40954f0f8d14
children 46fbf2f2d1aa
comparison
equal deleted inserted replaced
36:1d15cd0bd913 37:215aa111db64
1 <tool id="igblastn" name="igBLASTn" version="0.1.0"> 1 <tool id="igblastn" name="igBLASTn" version="0.1.0">
2 <description>Run igBLASTn</description> 2 <description>Run igBLASTn</description>
3 <command> 3 <command>
4 igblastn -germline_db_V /usr/local/ncbi-igblast-1.0.0/database/human_gl_V -germline_db_J /usr/local/ncbi-igblast-1.0.0/database/human_gl_J -germline_db_D /usr/local/ncbi-igblast-1.0.0/database/human_gl_D -domain_system imgt -query $input -auxiliary_data /usr/local/ncbi-igblast-1.0.0/optional_file/human_gl.aux -show_translation -outfmt 3 > $output 4 igblastn -germline_db_V \$IGDATA/database/human_gl_V -germline_db_J \$IGDATA/database/human_gl_J -germline_db_D \$IGDATA/database/human_gl_D -domain_system imgt -query $input -auxiliary_data \$IGDATA/optional_file/human_gl.aux -show_translation -outfmt 3 > $output
5 </command> 5 </command>
6 <inputs> 6 <inputs>
7 <param name="input" type="data" format="fasta" label="Fasta file"/> 7 <param name="input" type="data" format="fasta" label="Fasta file"/>
8 </inputs> 8 </inputs>
9 <outputs> 9 <outputs>